Check olink metadata proteins file

check whether metadata-proteins.txt file is following guidelines

check_metadata_proteins(
  df,
  return_n_issues = FALSE,
  validate_uniprot = FALSE,
  verbose = TRUE
)

Arguments

df

(data.frame) metadata_proteins df

return_n_issues

(logical) if TRUE returns the number of issues.

validate_uniprot

(logical) if TRUE, check if all uniprot ids are valid connecting to Uniprot. Note: depending on the number of ids, it might take several finish to complete the validation

verbose

(logical) TRUE (default) shows messages

Value

(int) number of issues identified

Examples

{
if (FALSE) {
check_metadata_proteins(df = metadata_proteins)
}
}