Validate vial labels from DMAQC

validate vial label from DMAQC

check_viallabel_dmaqc(
  vl_submitted,
  dmaqc_shipping_info,
  tissue_code,
  cas,
  phase,
  failed_samples,
  out_qc_folder = NULL,
  outfile_missed_viallabels,
  return_n_issues = FALSE,
  verbose = TRUE
)

Arguments

vl_submitted

(vector) results df

dmaqc_shipping_info

(data.frame) dmaqc shipping information

tissue_code

(char) tissue code

cas

(char) CAS code

phase

(char) phase code

failed_samples

(char) metadata_metabolites df

out_qc_folder

(char) output qc folder (it creates the folder if it doesn't exist)

outfile_missed_viallabels

(char) file name for missed vial labels

return_n_issues

(logical) if TRUE returns the number of issues

verbose

(logical) TRUE (default) shows messages

Value

(int) number of issues identified