Combines all files from a Metabolomics batch — combine_metabolomics

Combines all the files from an untargeted assay submission including metadata_sample, metadata_metabolites, results for both "NAMED" and "UNNAMED" folders

Usage

combine_metabolomics_batch(input_results_folder, cas, verbose = TRUE)

Arguments

input_results_folder: (char) Path to the PROCESSED_YYYYMMDD folder
cas: (char) Chemical Analytical Site code (e.g "umichigan")
verbose: (logical) TRUE (default) shows messages

Value

(int) number of issues identified

Examples

if (FALSE) { # \dontrun{
all_datasets <- combine_metabolomics_batch(
                        input_results_folder = "/full/path/to/PROCESSED_YYYYMMDD/",
                        cas = "umichigan")
} # }