Merge phenotypic data (phenotypes_pass1a06_short) and metabolomics merged results and metadata
Value
(data.frame) Merged file, including the following columns:
- sample_id
Sample Id, including vial_label and site specific QC ids
- sample_type
Metabolomics sample types. Check metabolomics data transfer guidelines
- sample_order
Order of injection on Mass Spec
- metabolite_name
Given name by every lab
- refmet_name
Map of the metabolite name to the Metabolomics RefMet database
- mz
mass over charge
- rt
retention time
- formula
chemical formula
- neutral_mass
neutral mass
- id
type of metabolite identification: "named", "unnamed"
- metabolite
Merge "refmet" for "named" metabolites and "metabolite_name" for "unnamed" metabolites
- quantification
Untargeted: Peak area, Targeted: absolute concentration (check "experimentalDetails" for unit)
- tissue_code
MoTrPAC tissue code
- tissue_name
Tissue name
- group_time_point
Intervention group (Exercise / Control) + time point
- sex
Animal Sex
- site_code
Chemical Analysis Site (CAS) short abbreviation
- group
Intervention group: Exercise / Control
- condition
Sex + group + time-point
- bioreplicate
Sex + group + time-point + sample_order