Plot Basic Metabolomics QC charts

Source: R/metabolomics_plots.R

Plot intensity distributions, number of unique ids, NA values and RT/MZ density maps (only untargeted)

plot_basic_metabolomics_qc(
  results,
  results_long,
  metametab = NULL,
  out_qc_folder = NULL,
  output_prefix,
  printPDF = TRUE,
  untargeted = TRUE,
  verbose = TRUE
)

Arguments

results

(df) metabolomics results (both named and unnamed already merged, if untargeted)

results_long

(df) metabolomics results (both named and unnamed already merged, if untargeted, in long format)

metametab

(df) metadata samples metadata (only untargeted sites)

out_qc_folder

(char) output qc folder (it creates the folder if it doesn't exist)

output_prefix

(char) prefix for the file name output (pdf file)

printPDF

(logical) TRUE (default) prints pdf file

untargeted

(logical) TRUE if the dataset is untargeted (named + unnamed metabolites)

verbose

(logical) TRUE (default) shows messages