Plot Basic Metabolomics QC charts — plot_basic_metabolomics

Plot intensity distributions, number of unique ids, NA values and RT/MZ density maps (only untargeted)

Usage

plot_basic_metabolomics_qc(
  results,
  results_long,
  metametab = NULL,
  out_qc_folder = NULL,
  output_prefix,
  printPDF = TRUE,
  untargeted = TRUE,
  verbose = TRUE
)

Arguments

results: (df) metabolomics results (both named and unnamed already merged, if untargeted)
results_long: (df) metabolomics results (both named and unnamed already merged, if untargeted, in long format)
metametab: (df) metadata samples metadata (only untargeted sites)
out_qc_folder: (char) output qc folder (it creates the folder if it doesn't exist)
output_prefix: (char) prefix for the file name output (pdf file)
printPDF: (logical) TRUE (default) prints pdf file
untargeted: (logical) TRUE if the dataset is untargeted (named + unnamed metabolites)
verbose: (logical) TRUE (default) shows messages