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Write LAB Data Release

Source: R/lab_qc.R
write_lab_releases.Rd

Write out LAB data releases. This function doesn't check whether data has been submitted according to guidelines; it assumes that the data has already been validated and is ready for release.

Usage

write_lab_releases(
  input_results_folder,
  folder_name = "motrpac_release",
  folder_root = NULL,
  version_file = "v1.0",
  verbose = TRUE
)

Arguments

input_results_folder

(character) Path to the PROCESSED_YYYYMMDD folder containing the LAB data.

folder_name

(character) Output folder name. Default is "motrpac_release".

folder_root

(character) Absolute path where the output folder will be created. Default is the current working directory.

version_file

(character) File version number (e.g., "v1.0"). Default is "v1.0".

verbose

(logical) If TRUE (default), displays messages during processing.

Value

Creates the BIC release folder and file structure: PHASE/OMICS/TCODE_NAME/ASSAY/, and writes out files with names: motrpac_phase-code_tissuecode_assay_file-details-version.txt, where file-details can be:

  • metadata-analyte,

  • metadata-samples,

  • results

Examples

if (FALSE) { # \dontrun{
write_lab_releases(
   input_results_folder = "/full/path/to/PROCESSED_YYYYMMDD/")
} # }