Write proteomics data release — write_proteomics

Write out proteomics data releases. Doesn't check whether data has been submited according to guidelines

write_proteomics_releases(
  input_results_folder,
  folder_name = "motrpac_release",
  folder_root = NULL,
  version_file = "v1.0",
  verbose = TRUE
)

Arguments

input_results_folder: (char) Path to the RESULTS_YYYYMMDD folder
folder_name: (char) output folder name.
folder_root: (char) absolute path to write the output folder. Default: current directory
version_file: (char) file version number (v#.#)
verbose: (logical) TRUE (default) shows messages

Value

bic release folder/file structure PHASE/OMICS/TCODE_NAME/ASSAY/ and file names, including: motrpac_YYYYMMDD_phasecode_tissuecode_omics_assay_file-details.txt where files-details can be: rii-results.txt, ratio-results.txt, vial-metadata.txt

Examples

if (FALSE) { # \dontrun{
write_proteomics_releases(
   input_results_folder = "/full/path/to/RESULTS_YYYYMMDD/")
} # }