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A data.table used to convert from feature IDs to various identifiers.

Usage

HUMAN_FEATURE_TO_GENE

Format

A sorted data.table with 1,958,568 rows and 11 columns:

assay

factor; the assay (ome). One of "epigen-atac-seq", "epigen-methylcap-seq", "metab", "prot-ol", "prot-ph", "prot-pr", or "transcript-rna-seq".

feature_id

factor; the feature identifier.

entrez_gene

factor; Entrez gene identifier.

gene_symbol

factor; gene symbol.

ensembl_gene

factor; ensembl gene identifier.

custom_annotation

factor; custom feature annotation. Only applicable if assay is "epigen-atac-seq" or "epigen-methylcap-seq".

relationship_to_gene

numeric; only applicable if assay is "epigen-atac-seq" or "epigen-methylcap-seq".

uniprot

factor; UniProt identifier.

refmet_name

factor; RefMet metabolite identifier.

kegg_id

factor; KEGG identifier.

flanking_sequence

factor; flanking sequence. Only applicable if assay is "prot-ph".