Summary Statistics by Tissue, Assay, and Platform

Group- and timepoint-level summary statistics computed across multiple tissues, molecular assays, and analytical platforms. Each dataset contains means and standard deviations calculated within randomization groups and timepoints. These objects are intended for descriptive and exploratory use and are not differential analysis results. Available for all omes/tissue/platforms except methylcap, which is processed separately.

For any datasets with missing values, the values reflect means/sds/n with missing values excluded.

Usage

## Adipose
ADIPOSE_EPIGEN_METHYLCAP_SEQ_SUM_STATS
ADIPOSE_METAB_T_ACOA_SUM_STATS
ADIPOSE_METAB_T_AMINES_SUM_STATS
ADIPOSE_METAB_T_TCA_SUM_STATS
ADIPOSE_METAB_T_NUC_SUM_STATS
ADIPOSE_METAB_T_KA_SUM_STATS
ADIPOSE_METAB_T_OXYLIPNEG_SUM_STATS
ADIPOSE_METAB_U_HILICPOS_SUM_STATS
ADIPOSE_METAB_U_IONPNEG_SUM_STATS
ADIPOSE_METAB_U_LRPNEG_SUM_STATS
ADIPOSE_METAB_U_LRPPOS_SUM_STATS
ADIPOSE_METAB_U_RPNEG_SUM_STATS
ADIPOSE_METAB_U_RPPOS_SUM_STATS

ADIPOSE_PROT_PH_SUM_STATS
ADIPOSE_PROT_PR_SUM_STATS
ADIPOSE_TRANSCRIPT_RNA_SEQ_SUM_STATS

## Blood
BLOOD_EPIGEN_METHYLCAP_SEQ_SUM_STATS
BLOOD_METAB_T_AMINES_SUM_STATS
BLOOD_METAB_T_TCA_SUM_STATS
BLOOD_METAB_T_CONV_SUM_STATS
BLOOD_METAB_T_OXYLIPNEG_SUM_STATS
BLOOD_METAB_U_HILICPOS_SUM_STATS
BLOOD_METAB_U_IONPNEG_SUM_STATS
BLOOD_METAB_U_LRPNEG_SUM_STATS
BLOOD_METAB_U_LRPPOS_SUM_STATS
BLOOD_METAB_U_RPNEG_SUM_STATS
BLOOD_METAB_U_RPPOS_SUM_STATS

BLOOD_PROT_OL_SUM_STATS
BLOOD_TRANSCRIPT_RNA_SEQ_SUM_STATS
BLOOD_EPIGEN_ATAC_SEQ_SUM_STATS

## Muscle
MUSCLE_EPIGEN_METHYLCAP_SEQ_SUM_STATS
MUSCLE_METAB_T_AMINES_SUM_STATS
MUSCLE_METAB_T_TCA_SUM_STATS
MUSCLE_METAB_T_NUC_SUM_STATS
MUSCLE_METAB_T_OXYLIPNEG_SUM_STATS
MUSCLE_METAB_U_HILICPOS_SUM_STATS
MUSCLE_METAB_U_IONPNEG_SUM_STATS
MUSCLE_METAB_U_LRPNEG_SUM_STATS
MUSCLE_METAB_U_LRPPOS_SUM_STATS
MUSCLE_METAB_U_RPNEG_SUM_STATS
MUSCLE_METAB_U_RPPOS_SUM_STATS

MUSCLE_PROT_PH_SUM_STATS
MUSCLE_PROT_PR_SUM_STATS
MUSCLE_TRANSCRIPT_RNA_SEQ_SUM_STATS
MUSCLE_EPIGEN_ATAC_SEQ_SUM_STATS

Format

Each object is a data.frame with one row per feature per randomization group and timepoint. Columns typically include feature identifiers, tissue, assay, platform, group, timepoint, mean, and standard deviation.

Details

Datasets are stratified by tissue (e.g., adipose, blood, muscle), assay (metabolomics, proteomics, transcriptomics, epigenomics), and where applicable, analytical platform (e.g., TCA, AMINES, OXYLIPNEG, RPNEG, RPPOS, ATAC-SEQ, RNA-SEQ).