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List the Clinical Omes

clinical_ome_list.Rd

The omes carrying clinical chemistry rather than a research assay. Every loader takes a load_clinical argument that gates these, and it is FALSE by default.

Usage

clinical_ome_list()

Value

A character vector of the clinical omes.

Details

c1.3 carried clinical chemistry as a single "clinical-chemistry" assay; c2.0 splits it into a metabolomics and a proteomics assay, each with its own QC, differential-analysis and summary-statistic objects.

They are gated rather than simply included because they are a different kind of measurement from the research omes, and every caller written before c2.0 that asks for "all" is summarising the molecular landscape. Adding them by default changes those results silently: the clinical metabolomics differential-analysis rows overlap the combined *_METAB_DA table on five analytes (Cortisol, Glycerol, KET, NEFA and Glucose), and a caller that maps an assay to a display name puts clinical chemistry into a row that was never meant to hold it.

Pass load_clinical = TRUE to get them.

See also

ome_available_list(), metab_only_list()

Examples

clinical_ome_list()
#> [1] "prot-clinical"    "metab-t-clinical"