{
    "atac.title" : "MoTrPAC deep dive",
    "atac.pipeline_type" : "atac",
    
    "atac.genome_tsv" : "~/ATAC_PIPELINE/REFERENCES/hg38/hg38.tsv",

    "atac.align_only" : false,
    "atac.paired_end" : true,
    "atac.auto_detect_adapter" : true,
    "atac.multimapping" : 4,

    "atac.enable_idr" : true,
    "atac.idr_thresh" : 0.05,

    "atac.enable_xcor" : false,
    "atac.enable_count_signal_track" : false,

    "atac.enable_tss_enrich" : true,

    "atac.align_cpu" : 4,
    "atac.align_mem_mb" : 20000,

    "atac.filter_cpu" : 4,
    "atac.filter_mem_mb" : 20000,

    "atac.bam2ta_cpu" : 4,
    "atac.bam2ta_mem_mb" : 20000,
    
    "atac.description" : "Human-gastroc-900XXXXXXXX",

    "atac.fastqs_rep1_R1" : [
        "/projects/motrpac/HUMAN/ATAC/NOVASEQ_BATCH1/fastq_raw/900XXXXXXXX_R1.fastq.gz"
    ],

    "atac.fastqs_rep1_R2" : [
        "/projects/motrpac/HUMAN/ATAC/NOVASEQ_BATCH1/fastq_raw/900XXXXXXXX_R2.fastq.gz"
    ]

}