QC Plot of proteomics reporter ion intensity data — proteomics_plots

check whether results file is following guidelines

Usage

proteomics_plots_rii(
  all_vial_labels,
  all_samples,
  peprii,
  isPTM,
  v_m,
  out_qc_folder = NULL,
  output_prefix,
  printPDF,
  verbose
)

Arguments

all_vial_labels: (vector) only vial_labels
all_samples: (vector) all sample ids
peprii: (char) Reporter Ion Intensity df
isPTM: (logical) Is a PTM assay
v_m: (df) sample metadata
out_qc_folder: (char) if f_proof is TRUE, a folder path can be provided (otherwise print in current working directory)
output_prefix: (char) provide a prefix for the output name
printPDF: (logical) if TRUE (default print plots to pdf)
verbose: (logical) TRUE (default) shows messages

Value

(int) number of issues identified

Examples

{
check_results(r_m = results_named, m_s = metadata_sample_named, m_m = metadata_metabolites_named)
}
#>   + (+) All samples from `results_metabolite` are available in `metadata_sample`
#>   + (+) `metabolite_name` is identical in both [results] and `metadata_metabolites` files: OK
#>   + (+) `sample_id` columns are numeric: OK