Transcription-Factor Phosphosite Regulator Pool
UTORONTO_TFs.RdThe prot-ph features whose gene is a curated human transcription
factor. The Human TFs database extract of Lambert et al (PMID:29425488) is
restricted to the entries curated as Is TF? == "Yes", and those gene
symbols are mapped through HUMAN_FEATURE_TO_GENE to every
prot-ph feature sharing the symbol.
This is a regulator pool, not an annotation table. It exists to restrict a
network inference to phosphosites sitting on transcription factors, and the
feature_id column is what such a caller subsets on. The curated TF
call, the DNA-binding domain and the rest of the Lambert annotation are not
carried here; consult the source below for those.
Format
A data frame with 1,381 rows and 2 columns, one row per prot-ph feature.
- feature_id
character; the prot-ph phosphosite identifier, unique within the table.
- gene_symbol
character; the HGNC symbol of the transcription factor the site sits on. 383 distinct symbols, since a factor generally carries more than one site.