MotrpacRatTraining6moData 2.0.0 (2023-11-08)
- Replace all instances of
t65-aorta with t99-vena-cava, and Aorta with Vena Cava.
MotrpacRatTraining6moData 1.9.1 (2023-06-02)
- Update
MotrpacRatTraining6mo version requirement.
MotrpacRatTraining6moData 1.9.0 (2023-04-28)
- Create a new tag to associate with Zenodo.
MotrpacRatTraining6moData 1.8.0 (2023-01-18)
- Add
PROT_FEATURE_ANNOT, PHOPSHO_FEATURE_ANNOT, UBIQ_FEATURE_ANNOT, ACETYL_FEATURE_ANNOT, TRNSCRPT_FEATURE_ANNOT.
- Add
graphical_cluster column to GRAPH_PW_ENRICH.
- In
TRAINING_REGULATED_FEATURES only, calculate missing timewise_logFC_se for METHYL features: timewise_logFC_se = timewise_logFC/timewise_zscore
- Change URLs for
ATAC_FEATURE_ANNOT and METHYL_FEATURE_ANNOT.
- Update
@source entries.
MotrpacRatTraining6moData 1.7.0 (2022-12-27)
- Update phenotypic data (
PHENO) to v3, which includes changes to the VO2max data as announced by the BIC. Retain old column names for backwards compatibility.
- Copy all
training-dea tables to GCP and add documentation (TRAINING_DA).
- Add details of metabolomics meta-regression to
METAB_DA_METAREG.
MotrpacRatTraining6moData 1.6.1 (2022-12-13)
- Fix shuffled PIDs in
METAB_NORM_DATA_FLAT and IMMUNO_NORM_DATA_FLAT introduced by not reordering the list returned by MotrpacRatTraining6mo::viallabel_to_pid(). METAB_NORM_DATA_NESTED and IMMUNO_NORM_DATA_NESTED are unchanged.
- Regenerate
TRAINING_REGULATED_NORM_DATA and TRAINING_REGULATED_NORM_DATA_NO_OUTLIERS to account for changes above.
MotrpacRatTraining6moData 1.6.0 (2022-11-08)
- Add
TRAINING_REGULATED_NORM_DATA and TRAINING_REGULATED_NORM_DATA_NO_OUTLIERS
- Fix missing
feature labels in METAB_NORM_DATA_FLAT
MotrpacRatTraining6moData 1.5.0 (2022-10-14)
MotrpacRatTraining6moData 1.4.0 (2022-10-10)
- Add
FEATURE_TO_GENE_FILT for faster indexing
MotrpacRatTraining6moData 1.3.3 (2022-09-20)
First version with vignette. Additional minor improvements to documentation.