Sample outliers

Outliers excluded during differential analysis

Usage

OUTLIERS

Format

A data frame with 27 rows and 9 variables:

viallabel

character, sample identifier

tissue

character, tissue abbreviation, one of TISSUE_ABBREV

tissue_code

character, tissue code used in data release. See MotrpacBicQC::bic_animal_tissue_code.

assay

character, assay abbreviation, one of ASSAY_ABBREV

assay_code

character, assay code used in data release. See MotrpacBicQC::assay_codes.

platform

character, LUMINEX panel if assay is IMMUNO

pid

integer, participant ID, one per animal

group

character, combination of sex and training time point that the sample belongs to, e.g., "female_1w"

reason

character, reason(s) the sample was called an outlier

Source

https://docs.google.com/spreadsheets/d/1DetAMovcmMJqulEA41yBLd4I9Q1XSHPH1U8U2aVMShg/edit#gid=2057863805

Details

If the sample was an outlier in principal component (PC) space, reason lists the PC(s) in which it was an outlier. See ome-specific details of outlier calling in the supplementary methods of the manuscript.