Phenotypic data for samples from the MoTrPAC endurance exercise
training study in 6-month-old rats. One row per sample (viallabel).
Format
A data frame with 5955 rows and 510 variables:
pidinteger, randomly generated 8-digit numeric identifier used in linkage to phenotypic data. One PID per animal, i.e., all samples from the same animal have the same PID.
bidinteger, 5-digit numeric identifier for all samples collected for a sample collection period. All samples collected during that period will have the same BID.
labeliddouble, unique 11 digit identifier for specimen label ID, originating at the collection site, that provides a link to specimen processing and used for shipments to the biorepository (same as
viallabelonly in instances where aliquots were not further processed at the biorepository)viallabelcharacter, unique 11 digit numeric identifier of a sample vial made up of
bid,key.sacrificetime,specimen.processing.sampletypedescription, and aliquot numberkey.protocolcharacter, protocol in which the procedures for sample collection were outlined
key.agegroupcharacter, age group for the animal
key.d_arrivecharacter, date animal arrived at site (same as
registration.d_arrive)key.d_sacrificecharacter, date animal was sacrificed (same as
specimen.collection.d_visit)key.interventioncharacter, exercise group defined by those who complete exercise training
key.sacrificetimecharacter, weeks since the beginning of the intervention
key.anirandgroupcharacter, description of the randomization group
key.siteidcharacter, site where the samples were collected
registration.d_visitcharacter, date registration was completed
registration.days_visitinteger, day registration was completed relative to
registration.d_arrive(count)registration.staffidinteger, registration staff ID
registration.siteidcharacter, registration site
registration.ratidcharacter, site rat ID
registration.d_arrivecharacter, date the rat arrived at the site
registration.days_arriveinteger, day of arrival relative to
registration.d_arrive(count)registration.batchnumberinteger, registration batch number
registration.d_reverselightcharacter, date the rat was housed in reverse light
registration.days_reverselightinteger, day the rat was housed in reverse light relative to
registration.d_arrive(count)registration.d_birthcharacter, rat date of birth (+/- two weeks)
registration.days_birthinteger, rat day of birth relative to
registration.d_arrive(count)registration.sexcharacter, sex, one of "male", "female"
registration.weightdouble, rat's body weight
registration.cagenumberinteger, cage number in which the rat was housed
registration.commentscharacter, registration comments
familiarization.d_visitcharacter, date familiarization was completed
familiarization.days_visitinteger, day familiarization was completed relative to
registration.d_arrive(count)familiarization.staffidinteger, familiarization staff ID
familiarization.siteidcharacter, familiarization site
familiarization.d_treadmillbegincharacter, date the rat began treadmill familiarization
familiarization.days_treadmillbegininteger, day the rat began treadmill familiarization relative to
registration.d_arrive(count)familiarization.d_treadmillcompletecharacter, date the rat completed treadmill familiarization
familiarization.days_treadmillcompleteinteger, day the rat completed treadmill familiarization relative to
registration.d_arrive(count)familiarization.activity_scoredouble, rat's activity score
familiarization.compliantcharacter, was this rat compliant?
familiarization.weightdouble, rat's body weight
training.d_visitcharacter, date intervention started
training.days_visitinteger, day intervention started relative to
registration.d_arrivetraining.staffidinteger, training staff ID
training.siteidcharacter, training site
training.day1datecharacter, date of given training day
training.day1_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day1timecharacter, time of given training day
training.day1_treadmillspeeddouble, treadmill speed on given training day
training.day1_treadmillinclinedouble, treadmill incline on given training day
training.day1_timeontreadmillinteger, time on treadmill on given training day
training.day1_weightdouble, weight on given training day
training.day1_posttrainlactdouble, post-training lactate on given training day
training.day1_scoreinteger, score on given training day
training.day1_commentscharacter, comments on given training day
training.day2datecharacter, date of given training day
training.day2_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day2timecharacter, time of given training day
training.day2_treadmillspeeddouble, treadmill speed on given training day
training.day2_treadmillinclinedouble, treadmill incline on given training day
training.day2_timeontreadmillinteger, time on treadmill on given training day
training.day2_scoreinteger, score on given training day
training.day2_commentscharacter, comments on given training day
training.day3datecharacter, date of given training day
training.day3_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day3timecharacter, time of given training day
training.day3_treadmillspeeddouble, treadmill speed on given training day
training.day3_treadmillinclinedouble, treadmill incline on given training day
training.day3_timeontreadmillinteger, time on treadmill on given training day
training.day3_scoreinteger, score on given training day
training.day3_commentscharacter, comments on given training day
training.day4datecharacter, date of given training day
training.day4_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day4timecharacter, time of given training day
training.day4_treadmillspeeddouble, treadmill speed on given training day
training.day4_treadmillinclinedouble, treadmill incline on given training day
training.day4_timeontreadmillinteger, time on treadmill on given training day
training.day4_scoreinteger, score on given training day
training.day4_commentscharacter, comments on given training day
training.day5datecharacter, date of given training day
training.day5_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day5timecharacter, time of given training day
training.day5_treadmillspeeddouble, treadmill speed on given training day
training.day5_treadmillinclinedouble, treadmill incline on given training day
training.day5_timeontreadmillinteger, time on treadmill on given training day
training.day5_posttrainlactdouble, post-training lactate on given training day
training.day5_scoreinteger, score on given training day
training.day5_commentscharacter, comments on given training day
training.day6datecharacter, date of given training day
training.day6_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day6timecharacter, time of given training day
training.day6_treadmillspeeddouble, treadmill speed on given training day
training.day6_treadmillinclinedouble, treadmill incline on given training day
training.day6_timeontreadmillinteger, time on treadmill on given training day
training.day6_weightdouble, weight on given training day
training.day6_posttrainlactdouble, post-training lactate on given training day
training.day6_scoreinteger, score on given training day
training.day6_commentscharacter, comments on given training day
training.day7datecharacter, date of given training day
training.day7_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day7timecharacter, time of given training day
training.day7_treadmillspeeddouble, treadmill speed on given training day
training.day7_treadmillinclinedouble, treadmill incline on given training day
training.day7_timeontreadmillinteger, time on treadmill on given training day
training.day7_posttrainlactdouble, post-training lactate on given training day
training.day7_scoreinteger, score on given training day
training.day7_commentscharacter, comments on given training day
training.day8datecharacter, date of given training day
training.day8_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day8timecharacter, time of given training day
training.day8_treadmillspeeddouble, treadmill speed on given training day
training.day8_treadmillinclinedouble, treadmill incline on given training day
training.day8_timeontreadmillinteger, time on treadmill on given training day
training.day8_posttrainlactdouble, post-training lactate on given training day
training.day8_scoreinteger, score on given training day
training.day8_commentscharacter, comments on given training day
training.day9datecharacter, date of given training day
training.day9_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day9timecharacter, time of given training day
training.day9_treadmillspeeddouble, treadmill speed on given training day
training.day9_treadmillinclinedouble, treadmill incline on given training day
training.day9_timeontreadmillinteger, time on treadmill on given training day
training.day9_posttrainlactdouble, post-training lactate on given training day
training.day9_scoreinteger, score on given training day
training.day9_commentscharacter, comments on given training day
training.day10datecharacter, date of given training day
training.day10_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day10timecharacter, time of given training day
training.day10_treadmillspeeddouble, treadmill speed on given training day
training.day10_treadmillinclinedouble, treadmill incline on given training day
training.day10_timeontreadmillinteger, time on treadmill on given training day
training.day10_posttrainlactdouble, post-training lactate on given training day
training.day10_scoreinteger, score on given training day
training.day10_commentscharacter, comments on given training day
training.day11datecharacter, date of given training day
training.day11_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day11timecharacter, time of given training day
training.day11_treadmillspeeddouble, treadmill speed on given training day
training.day11_treadmillinclinedouble, treadmill incline on given training day
training.day11_timeontreadmillinteger, time on treadmill on given training day
training.day11_weightdouble, weight on given training day
training.day11_posttrainlactdouble, post-training lactate on given training day
training.day11_scoreinteger, score on given training day
training.day11_commentscharacter, comments on given training day
training.day12datecharacter, date of given training day
training.day12_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day12timecharacter, time of given training day
training.day12_treadmillspeeddouble, treadmill speed on given training day
training.day12_treadmillinclinedouble, treadmill incline on given training day
training.day12_timeontreadmillinteger, time on treadmill on given training day
training.day12_scoreinteger, score on given training day
training.day12_commentscharacter, comments on given training day
training.day13datecharacter, date of given training day
training.day13_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day13timecharacter, time of given training day
training.day13_treadmillspeeddouble, treadmill speed on given training day
training.day13_treadmillinclinedouble, treadmill incline on given training day
training.day13_timeontreadmillinteger, time on treadmill on given training day
training.day13_scoreinteger, score on given training day
training.day13_commentscharacter, comments on given training day
training.day14datecharacter, date of given training day
training.day14_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day14timecharacter, time of given training day
training.day14_treadmillspeeddouble, treadmill speed on given training day
training.day14_treadmillinclinedouble, treadmill incline on given training day
training.day14_timeontreadmillinteger, time on treadmill on given training day
training.day14_scoreinteger, score on given training day
training.day14_commentscharacter, comments on given training day
training.day15datecharacter, date of given training day
training.day15_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day15timecharacter, time of given training day
training.day15_treadmillspeeddouble, treadmill speed on given training day
training.day15_treadmillinclinedouble, treadmill incline on given training day
training.day15_timeontreadmillinteger, time on treadmill on given training day
training.day15_posttrainlactdouble, post-training lactate on given training day
training.day15_scoreinteger, score on given training day
training.day15_commentscharacter, comments on given training day
training.day16datecharacter, date of given training day
training.day16_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day16timecharacter, time of given training day
training.day16_treadmillspeeddouble, treadmill speed on given training day
training.day16_treadmillinclinedouble, treadmill incline on given training day
training.day16_timeontreadmillinteger, time on treadmill on given training day
training.day16_weightdouble, weight on given training day
training.day16_posttrainlactdouble, post-training lactate on given training day
training.day16_scoreinteger, score on given training day
training.day16_commentscharacter, comments on given training day
training.day17datecharacter, date of given training day
training.day17_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day17timecharacter, time of given training day
training.day17_treadmillspeeddouble, treadmill speed on given training day
training.day17_treadmillinclinedouble, treadmill incline on given training day
training.day17_timeontreadmillinteger, time on treadmill on given training day
training.day17_scoreinteger, score on given training day
training.day17_commentscharacter, comments on given training day
training.day18datecharacter, date of given training day
training.day18_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day18timecharacter, time of given training day
training.day18_treadmillspeeddouble, treadmill speed on given training day
training.day18_treadmillinclinedouble, treadmill incline on given training day
training.day18_timeontreadmillinteger, time on treadmill on given training day
training.day18_scoreinteger, score on given training day
training.day18_commentscharacter, comments on given training day
training.day19datecharacter, date of given training day
training.day19_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day19timecharacter, time of given training day
training.day19_treadmillspeeddouble, treadmill speed on given training day
training.day19_treadmillinclinedouble, treadmill incline on given training day
training.day19_timeontreadmillinteger, time on treadmill on given training day
training.day19_scoreinteger, score on given training day
training.day19_commentscharacter, comments on given training day
training.day20datecharacter, date of given training day
training.day20_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day20timecharacter, time of given training day
training.day20_treadmillspeeddouble, treadmill speed on given training day
training.day20_treadmillinclinedouble, treadmill incline on given training day
training.day20_timeontreadmillinteger, time on treadmill on given training day
training.day20_posttrainlactdouble, post-training lactate on given training day
training.day20_scoreinteger, score on given training day
training.day20_commentscharacter, comments on given training day
training.day21datecharacter, date of given training day
training.day21_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day21timecharacter, time of given training day
training.day21_treadmillspeeddouble, treadmill speed on given training day
training.day21_treadmillinclinedouble, treadmill incline on given training day
training.day21_timeontreadmillinteger, time on treadmill on given training day
training.day21_weightdouble, weight on given training day
training.day21_posttrainlactdouble, post-training lactate on given training day
training.day21_scoreinteger, score on given training day
training.day21_commentscharacter, comments on given training day
training.day22datecharacter, date of given training day
training.day22_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day22timecharacter, time of given training day
training.day22_treadmillspeeddouble, treadmill speed on given training day
training.day22_treadmillinclinedouble, treadmill incline on given training day
training.day22_timeontreadmillinteger, time on treadmill on given training day
training.day22_scoreinteger, score on given training day
training.day22_commentscharacter, comments on given training day
training.day23datecharacter, date of given training day
training.day23_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day23timecharacter, time of given training day
training.day23_treadmillspeeddouble, treadmill speed on given training day
training.day23_treadmillinclinedouble, treadmill incline on given training day
training.day23_timeontreadmillinteger, time on treadmill on given training day
training.day23_scoreinteger, score on given training day
training.day23_commentscharacter, comments on given training day
training.day24datecharacter, date of given training day
training.day24_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day24timecharacter, time of given training day
training.day24_treadmillspeeddouble, treadmill speed on given training day
training.day24_treadmillinclinedouble, treadmill incline on given training day
training.day24_timeontreadmillinteger, time on treadmill on given training day
training.day24_scoreinteger, score on given training day
training.day24_commentscharacter, comments on given training day
training.day25datecharacter, date of given training day
training.day25_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day25timecharacter, time of given training day
training.day25_treadmillspeeddouble, treadmill speed on given training day
training.day25_treadmillinclinedouble, treadmill incline on given training day
training.day25_timeontreadmillinteger, time on treadmill on given training day
training.day25_posttrainlactdouble, post-training lactate on given training day
training.day25_scoreinteger, score on given training day
training.day25_commentscharacter, comments on given training day
training.day26datecharacter, date of given training day
training.day26_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day26timecharacter, time of given training day
training.day26_treadmillspeeddouble, treadmill speed on given training day
training.day26_treadmillinclinedouble, treadmill incline on given training day
training.day26_timeontreadmillinteger, time on treadmill on given training day
training.day26_weightdouble, weight on given training day
training.day26_posttrainlactdouble, post-training lactate on given training day
training.day26_scoreinteger, score on given training day
training.day26_commentscharacter, comments on given training day
training.day27datecharacter, date of given training day
training.day27_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day27timecharacter, time of given training day
training.day27_treadmillspeeddouble, treadmill speed on given training day
training.day27_treadmillinclinedouble, treadmill incline on given training day
training.day27_timeontreadmillinteger, time on treadmill on given training day
training.day27_scoreinteger, score on given training day
training.day27_commentscharacter, comments on given training day
training.day28datecharacter, date of given training day
training.day28_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day28timecharacter, time of given training day
training.day28_treadmillspeeddouble, treadmill speed on given training day
training.day28_treadmillinclinedouble, treadmill incline on given training day
training.day28_timeontreadmillinteger, time on treadmill on given training day
training.day28_scoreinteger, score on given training day
training.day28_commentscharacter, comments on given training day
training.day29datecharacter, date of given training day
training.day29_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day29timecharacter, time of given training day
training.day29_treadmillspeeddouble, treadmill speed on given training day
training.day29_treadmillinclinedouble, treadmill incline on given training day
training.day29_timeontreadmillinteger, time on treadmill on given training day
training.day29_scoreinteger, score on given training day
training.day29_commentscharacter, comments on given training day
training.day30datecharacter, date of given training day
training.day30_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day30timecharacter, time of given training day
training.day30_treadmillspeeddouble, treadmill speed on given training day
training.day30_treadmillinclinedouble, treadmill incline on given training day
training.day30_timeontreadmillinteger, time on treadmill on given training day
training.day30_posttrainlactdouble, post-training lactate on given training day
training.day30_scoreinteger, score on given training day
training.day30_commentscharacter, comments on given training day
training.day31datecharacter, date of given training day
training.day31_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day31timecharacter, time of given training day
training.day31_treadmillspeeddouble, treadmill speed on given training day
training.day31_treadmillinclinedouble, treadmill incline on given training day
training.day31_timeontreadmillinteger, time on treadmill on given training day
training.day31_weightdouble, weight on given training day
training.day31_posttrainlactdouble, post-training lactate on given training day
training.day31_scoreinteger, score on given training day
training.day31_commentscharacter, comments on given training day
training.day32datecharacter, date of given training day
training.day32_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day32timecharacter, time of given training day
training.day32_treadmillspeeddouble, treadmill speed on given training day
training.day32_treadmillinclinedouble, treadmill incline on given training day
training.day32_timeontreadmillinteger, time on treadmill on given training day
training.day32_scoreinteger, score on given training day
training.day32_commentscharacter, comments on given training day
training.day33datecharacter, date of given training day
training.day33_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day33timecharacter, time of given training day
training.day33_treadmillspeeddouble, treadmill speed on given training day
training.day33_treadmillinclinedouble, treadmill incline on given training day
training.day33_timeontreadmillinteger, time on treadmill on given training day
training.day33_scoreinteger, score on given training day
training.day33_commentscharacter, comments on given training day
training.day34datecharacter, date of given training day
training.day34_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day34timecharacter, time of given training day
training.day34_treadmillspeeddouble, treadmill speed on given training day
training.day34_treadmillinclinedouble, treadmill incline on given training day
training.day34_timeontreadmillinteger, time on treadmill on given training day
training.day34_scoreinteger, score on given training day
training.day34_commentscharacter, comments on given training day
training.day35datecharacter, date of given training day
training.day35_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day35timecharacter, time of given training day
training.day35_treadmillspeeddouble, treadmill speed on given training day
training.day35_treadmillinclinedouble, treadmill incline on given training day
training.day35_timeontreadmillinteger, time on treadmill on given training day
training.day35_posttrainlactdouble, post-training lactate on given training day
training.day35_scoreinteger, score on given training day
training.day35_commentscharacter, comments on given training day
training.day36datecharacter, date of given training day
training.day36_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day36timecharacter, time of given training day
training.day36_weightdouble, weight on given training day
training.day36_commentscharacter, comments on given training day
training.day37datecharacter, date of given training day
training.day37_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day37timecharacter, time of given training day
training.day37_treadmillspeeddouble, treadmill speed on given training day
training.day37_treadmillinclinedouble, treadmill incline on given training day
training.day37_timeontreadmillinteger, time on treadmill on given training day
training.day37_scoreinteger, score on given training day
training.day37_commentscharacter, comments on given training day
training.day38datecharacter, date of given training day
training.day38_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day38timecharacter, time of given training day
training.day38_treadmillspeeddouble, treadmill speed on given training day
training.day38_treadmillinclinedouble, treadmill incline on given training day
training.day38_timeontreadmillinteger, time on treadmill on given training day
training.day38_scoreinteger, score on given training day
training.day38_commentscharacter, comments on given training day
training.day39datecharacter, date of given training day
training.day39_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day39timecharacter, time of given training day
training.day39_treadmillspeeddouble, treadmill speed on given training day
training.day39_treadmillinclinedouble, treadmill incline on given training day
training.day39_timeontreadmillinteger, time on treadmill on given training day
training.day39_posttrainlactdouble, post-training lactate on given training day
training.day39_scoreinteger, score on given training day
training.day39_commentscharacter, comments on given training day
training.day40datecharacter, date of given training day
training.day40_daysinteger, day of given training day relative to
registration.d_arrive(count)training.day40timecharacter, time of given training day
training.day40_treadmillspeeddouble, treadmill speed on given training day
training.day40_treadmillinclinedouble, treadmill incline on given training day
training.day40_timeontreadmillinteger, time on treadmill on given training day
training.day40_posttrainlactdouble, post-training lactate on given training day
training.day40_scoreinteger, score on given training day
training.day40_commentscharacter, comments on given training day
vo2.max.test.d_visit_1character, date first VO2 max test was completed
vo2.max.test.d_visit_2character, date second VO2 max test was completed
vo2.max.test.days_visit_1integer, day first VO2 max test was completed relative to
registration.d_arrive(count)vo2.max.test.days_visit_2integer, day second VO2 max test was completed relative to
registration.d_arrive(count)vo2.max.test.staffid_1integer, first VO2 max test staff ID
vo2.max.test.staffid_2integer, second VO2 max test staff ID
vo2.max.test.siteid_1character, first VO2 max test site
vo2.max.test.siteid_2character, second VO2 max test site
vo2.max.test.visitcode_1character, visit code for first VO2 max test
vo2.max.test.visitcode_2character, visit code for second VO2 max test
vo2.max.test.formname_1character, form name for first VO2 max test
vo2.max.test.formname_2character, form name for second VO2 max test
vo2.max.test.versionnbr_1integer, form version number for first VO2 max test
vo2.max.test.versionnbr_2integer, form version number for second VO2 max test
vo2.max.test.d_vo2_1character, date of first VO2 max test
vo2.max.test.d_vo2_2character, date of second VO2 max test
vo2.max.test.days_vo2_1integer, date of first VO2 max test relative to
registration.d_arrive(count)vo2.max.test.days_vo2_2integer, date of second VO2 max test relative to
registration.d_arrive(count)vo2.max.test.t_vo2_1character, start time of first VO2 max test?
vo2.max.test.t_vo2_2character, start time of second VO2 max test?
vo2.max.test.blactate_begin_1double, blood lactate at the beginning of exercise for first VO2 max test
vo2.max.test.blactate_begin_2double, blood lactate at the beginning of exercise for second VO2 max test
vo2.max.test.vo2_max_1double, VO2 at max for first VO2 max test
vo2.max.test.vo2_max_2double, VO2 at max for second VO2 max test
vo2.max.test.vco2_max_1double, VCO2 at max for first VO2 max test
vo2.max.test.vco2_max_2double, VCO2 at max for second VO2 max test
vo2.max.test.rer_max_1double, RER at max for first VO2 max test
vo2.max.test.rer_max_2double, RER at max for second VO2 max test
vo2.max.test.speed_max_1double, max speed of running for first VO2 max test
vo2.max.test.speed_max_2double, max speed of running for second VO2 max test
vo2.max.test.t_complete_1character, time of completion for first VO2 max test
vo2.max.test.t_complete_2character, time of completion for second VO2 max test
vo2.max.test.blactate_end_1double, blood lactate at end of exercise for first VO2 max test
vo2.max.test.blactate_end_2double, blood lactate at end of exercise for second VO2 max test
vo2.max.test.vo2_comments_1character, comments about first VO2 max test
vo2.max.test.vo2_comments_2character, comments about second VO2 max test
nmr.testing.d_visit_1character, date first NMR test was completed
nmr.testing.d_visit_2character, date second NMR test was completed
nmr.testing.days_visit_1integer, day first NMR test was completed relative to
registration.d_arrive(count)nmr.testing.days_visit_2integer, day second NMR test was completed relative to
registration.d_arrive(count)nmr.testing.staffid_1integer, first NMR test staff ID
nmr.testing.staffid_2integer, second NMR test staff ID
nmr.testing.siteid_1character, first NMR test site
nmr.testing.siteid_2character, second NMR test site
nmr.testing.visitcode_1character, visit code for first NMR test
nmr.testing.visitcode_2character, visit code for second NMR test
nmr.testing.formname_1character, form name for first NMR test
nmr.testing.formname_2character, form name for second NMR test
nmr.testing.versionnbr_1integer, form version number for first NMR test
nmr.testing.versionnbr_2integer, form version number for second NMR test
nmr.testing.d_nmr_1character, date data was collected for the first NMR test
nmr.testing.d_nmr_2character, date data was collected for the second NMR test
nmr.testing.days_nmr_1integer, day data was collected for the first NMR test relative to
registration.d_arrive(count)nmr.testing.days_nmr_2integer, day data was collected for the second NMR test relative to
registration.d_arrive(count)nmr.testing.nmr_weight_1double, rat's body weight for first NMR test
nmr.testing.nmr_weight_2double, rat's body weight for second NMR test
nmr.testing.nmr_fat_1double, rat's percent body fat for first NMR test
nmr.testing.nmr_fat_2double, rat's percent body fat for second NMR test
nmr.testing.nmr_lean_1double, rat's percent lean for first NMR test
nmr.testing.nmr_lean_2double, rat's percent lean for second NMR test
nmr.testing.nmr_fluid_1double, rat's percent fluid for first NMR test
nmr.testing.nmr_fluid_2double, rat's percent fluid for second NMR test
nmr.testing.nmr_comments_2character, comments about second NMR test
terminal.weight.bwdouble, terminal body weight (g)
terminal.weight.lginteger, terminal lateral gastrocnemius weight (mg)
terminal.weight.mginteger, terminal medial gastrocnemius weight (mg)
terminal.weight.plinteger, terminal plantaris weight (mg)
terminal.weight.solinteger, terminal soleus weight (mg)
specimen.collection.d_visitcharacter, date of specimen collection
specimen.collection.days_visitinteger, day of specimen collection relative to
registration.d_arrive(count)specimen.collection.staffidinteger, specimen collection staff ID
specimen.collection.siteidcharacter, specimen collection site
specimen.collection.visitcodecharacter, specimen collection site visit code
specimen.collection.anesthesiaidinteger, anesthesia administrator ID
specimen.collection.t_anesthesiacharacter, anesthesia administration time
specimen.collection.bloodtypecharacter, blood type
specimen.collection.bloodtubecharacter, blood tube
specimen.collection.bloodcompletecharacter, blood collection complete
specimen.collection.bloodtechidcharacter, blood collection technician ID
specimen.collection.t_bloodstartcharacter, blood collection start time
specimen.collection.t_bloodstopcharacter, blood collection stop time
specimen.collection.t_edtafillcharacter, EDTA fill time
specimen.collection.bloodcommentscharacter, comments about blood collection
specimen.collection.uterustypecharacter, uterus type
specimen.collection.uteruscompletecharacter, uterus complete
specimen.collection.t_deathcharacter, time of death
specimen.collection.deathtypecharacter, type of death
specimen.processing.versionnbrinteger, specimen processing form version number
specimen.processing.formnamecharacter, specimen processing form name
specimen.processing.visitcodecharacter, specimen processing visit code
specimen.processing.siteidcharacter, specimen processing site
specimen.processing.sampletypedescriptioncharacter, specimen tissue type
specimen.processing.samplenumberinteger, specimen sample number
specimen.processing.timepointinteger, specimen time point
specimen.processing.aliquotdescriptioncharacter, specimen aliquot tube
specimen.processing.volumecharacter, specimen aliquot volume
specimen.processing.hemolyzedcharacter, specimen hemolyzed?
specimen.processing.commentscharacter, specimen processing comments
specimen.processing.t_collectioncharacter, specimen collection time
specimen.processing.t_edtaspincharacter, EDTA spin time
specimen.processing.t_freezecharacter, specimen freeze time
specimen.processing.techidcharacter, specimen processing tech ID
calculated.variables.pct_body_fat_changedouble, percent body fat change after training:
nmr.testing.nmr_fat_2 - nmr.testing.nmr_fat_1calculated.variables.pct_body_lean_changedouble, percent body lean change after training:
nmr.testing.nmr_lean_2 - nmr.testing.nmr_lean_1calculated.variables.pct_body_fluid_changedouble, percent body fluid change after training:
nmr.testing.nmr_fluid_2 - nmr.testing.nmr_fluid_1calculated.variables.lactate_change_dueto_traindouble, lactate change due to training:
vo2.max.test.blactate_end_2 - vo2.max.test.blactate_begin_1calculated.variables.vo2_max_changedouble, change in VO2 max after training:
vo2.max.test.vo2_max_2 - vo2.max.test.vo2_max_1calculated.variables.coll_time_traininteger, sample collection time after training (seconds): specimen collection date and time - last time trained
calculated.variables.deathtime_after_traininteger, time of death after training (seconds): death date and time - last time trained
calculated.variables.frozetime_after_traininteger, time of sample freezing after training (seconds): specimen collection date and freeze time - last time trained
biclabeldata.barcodedouble, scannable tube identifier used to map samples to vial labels
biclabeldata.shiptositeidcharacter, Chemical Analysis Site (CAS), i.e. the omics site)
biclabeldata.received_cascharacter, was the sample recieved by the Chemical Analysis Site (CAS)?
biclabeldata.protocolcharacter, study protocol ("phase 1b")
study_group_timepointcharacter, a BIC-created field that combines the intervention and sacrifice time codes
sacrificetimecustom column: character, sacrifice time point in weeks, one of "1w", "2w", "4w", "8w"
interventioncustom column: character, intervention, one of "training", "control"
groupcustom column: character, intervention group, one of "1w", "2w", "4w", "8w", "control"
sexcustom column: character, one of 'male' or 'female'
time_to_freezecustom column: integer, sample time from death to freeze,
calculated.variables.frozetime_after_train - calculated.variables.deathtime_after_traintissue_code_nocustom column: character, BIC tissue code. See MotrpacBicQC::bic_animal_tissue_code.
tissue_descriptioncustom column: character, original tissue description (from column
specimen.processing.sampletypedescription)tissuecustom column: character, tissue abbreviation, one of TISSUE_ABBREV
Details
Updated to v3 on 12/27/22. Relative to the original phenotypic data available through the MoTrPAC Data Portal, all-NA columns are removed, and column names are reverted to a previous version for backwards compatibility. Several columns are also added for simplicity.