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RNA-seq raw counts

Source: R/data.R
TRNSCRPT_RAW_COUNTS.Rd

RNA-seq raw counts as quantified by RSEM

Usage

TRNSCRPT_ADRNL_RAW_COUNTS

TRNSCRPT_BAT_RAW_COUNTS

TRNSCRPT_BLOOD_RAW_COUNTS

TRNSCRPT_COLON_RAW_COUNTS

TRNSCRPT_CORTEX_RAW_COUNTS

TRNSCRPT_HEART_RAW_COUNTS

TRNSCRPT_HIPPOC_RAW_COUNTS

TRNSCRPT_HYPOTH_RAW_COUNTS

TRNSCRPT_KIDNEY_RAW_COUNTS

TRNSCRPT_LIVER_RAW_COUNTS

TRNSCRPT_LUNG_RAW_COUNTS

TRNSCRPT_OVARY_RAW_COUNTS

TRNSCRPT_SKMGN_RAW_COUNTS

TRNSCRPT_SKMVL_RAW_COUNTS

TRNSCRPT_SMLINT_RAW_COUNTS

TRNSCRPT_SPLEEN_RAW_COUNTS

TRNSCRPT_TESTES_RAW_COUNTS

TRNSCRPT_VENACV_RAW_COUNTS

TRNSCRPT_WATSC_RAW_COUNTS

Format

A data frame with 32883 rows (feature_ID) and samples in columns (viallabel)

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 28 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 29 columns.

An object of class data.frame with 32883 rows and 54 columns.

An object of class data.frame with 32883 rows and 54 columns.

Details

STAR (v2.7.0d) was used to index and align reads to release 96 of the Ensembl Rattus norvegicus (rn6) genome and gene annotation. RSEM (v1.3.1) was used to quantify transcriptome-coordinate-sorted alignments using a forward probability of 0.5 to indicate a non-strand-specific protocol.