Function reference
-
cutstr() - Advanced Substrings of a Character Vector
-
enrichmat() - Enrichment Heatmap
-
fgsea2() - Fast Gene Set Enrichment Analysis
-
fora2() - Over-representation analysis
-
ggplotMDS() - Multidimensional scaling (MDS) plots with ggplot2
-
label_signif() - Label p-values according to significance
-
limma_full() - LIMMA Convenience Wrapper
-
msigdbr2() - Get gene sets / pathways from MSigDB
-
plot_ORA() - Plot module ORA results
-
plot_baseline() - Plot baseline (pre-training) measures
-
plot_eigenfeature() - Plot WGCNA module eigenfeatures
-
plot_pre_post() - Plot pre and post-training values
-
plot_volcano() - Create Volcano Plot
-
range_extend() - Extended Range of Values
-
rank_genes() - Calculate GSEA ranking metric values
-
run_WGCNA() - Run WGCNA Pipeline
-
theme_pub() - Custom ggplot2 theme
-
update_GO_names() - Update Gene Ontology term descriptions