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Load epigenetic differential analysis results

Source: R/fetch_prep_data.R
load_epigen_da.Rd

Load ATAC or METHYL timewise differential analysis results for a tissue from Google Cloud Storage. See ATAC_DA and METHYL_DA for more details.

Usage

load_epigen_da(tissue, assay, scratchdir = ".")

Arguments

tissue

character, tissue abbreviation, one of "BAT", "HEART", "HIPPOC", "KIDNEY", "LIVER", "LUNG", "SKM-GN", "WAT-SC"

assay

character, one of "METHYL" (RRBS) or "ATAC"

scratchdir

character, local directory in which to download data from Google Cloud Storage. Current working directory by default.

Value

data frame. See ATAC_DA and METHYL_DA for details.

Examples

if (FALSE) { # \dontrun{
# Return ATAC-seq differential analysis results for gastrocnemius skeletal muscle
data = load_epigen_da("SKM-GN", "METHYL")
} # }