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Make KEGG database

Source: R/pathway_enrichment.R
make_kegg_db.Rd

Make KEGG database for FELLA pathway enrichment with metabolites. Run internally in cluster_pathway_enrichment().

Usage

make_kegg_db(kegg_db_destination)

Arguments

kegg_db_destination

character, target directory for KEGG database. Parent directories are created if they do not yet exist.

See also

cluster_pathway_enrichment(), run_fella()

Examples

if (FALSE) { # \dontrun{
make_kegg_db("KEGGDB/20220921")
} # }