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Plot feature composition of clusters

Source: R/bayesian_graphical_clustering.R
plot_features_per_cluster.Rd

Plot number of features in each cluster and fractions of features that belong to each ome and tissue.

Usage

plot_features_per_cluster(cluster_res)

Arguments

cluster_res

Either a data frame or a list of lists. If a data frame, it needs at least two columns: "feature" and "cluster". The "feature" column should be in the format 'MotrpacRatTraining6moData::ASSAY_ABBREV;MotrpacRatTraining6moData::TISSUE_ABBREV;feature_ID'. If a list of lists, each sublist must be named with the cluster name (character string), and the values must be features in the format 'MotrpacRatTraining6moData::ASSAY_ABBREV;MotrpacRatTraining6moData::TISSUE_ABBREV;feature_ID'.

Value

ggplot2::ggplot() object

Examples

# Get top 10 largest paths, nodes, edges in gastrocnemius 
# Exclude additional 8-week nodes
clusters = extract_tissue_sets("SKM-GN", k=10, add_week8=FALSE)
# Select paths only 
clusters = clusters[grepl("->", names(clusters))]

# Plot distribution of features
plot_features_per_cluster(clusters)