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Replace Ensembl ID with gene symbol

Source: R/pathway_enrichment_networks.R
replace_ensembl_with_symbol.Rd

Function is used internally in enrichment_network_vis().

Usage

replace_ensembl_with_symbol(x, map, return_N = TRUE, collapse = TRUE)

Arguments

x

character, comma-separated Ensembl IDs

map

data table, mapping between Ensembl IDs and gene symbols. Must include the columns "ensembl_gene" and "gene_symbol".

return_N

boolean, whether to prepend the concatenated gene symbols with the number of unique gene symbols. TRUE by default.

collapse

boolean, whether to collapse the gene symbols into a comma-separated string. If not, return a vector of unique gene symbols. TRUE by default.

Value

either a string of comma-separated gene symbols, a vector of unique gene symbols, or a named list with two values ("N" and "genes") depending on the values of return_N and collapse.

See also

enrichment_network_vis()